User:PoojaJ

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Personal data

Name
Pooja Jain
Country
India
Education

Research interests

  • Data Mining
  • Structural Biology
  • Biological Networks

E-mail
Website
Pooja Jain

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Dissemination
Year 4 (Sep 2008 - Aug 2009)

Publication

  • P. Jain, J.M. Garibaldi and J.D. Hirst, Supervised Machine Learning Algorithms for Protein Structure Classification, Computational Biology and Chemistry 33 (2009) 216–223.
  • P. Jain and J.D. Hirst, Exploring protein structural dissimilarity to facilitate structure classification, BMC Structural Biology, 9:60,(2009).
  • P. Jain and J. D. Hirst, A geometric approach to protein structural similarity and classification, Jornadas de Bioinformatica, Lisboa, Portugal, November 3-6, 2009.

Pending Publication

  • P. Jain and J.D. Hirst, Automatic Protein Structure Classification using Random Forest, Submitted, Journal of Computational Biology.
  • P. Jain, P. Frasconi and J.D. Hirst, Constrained Prediction of Protein Topology, In preparation.

Talks

Posters

Year 3 (Sep 2007 - Aug 2008)

Talks

Year 2 (Sep 2006 - Aug 2007)

Talks

Posters

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Networking, teaching and training activities
Year 4 (Sep 2008 - Aug 2009)

Writing Skills

  • Academic Research Writing, Insessional 8 Weeks Module by CELE
  • Getting going on your thesis, 2008-11-26, Graduate School
  • Getting started with research design and statistics, 2008-11-24, 2008-12-01, 2008-12-10, Graduate School
  • Finishing your thesis, 2008-11-24, Graduate School
  • Virtual Statistical Tutor (an online referencing tool), Graduate School
  • Statistical course. School of Computer Science, Nottingham, 2008-12-16
  • Proofreading Workshop by CELE, Jubilee Campus,Nottingham, 2009-01-14 (2hrs) and 2009-01-21 (2hrs)


Conference

Year 3 (Sep 2007 - Aug 2008)

Secondment

Fellowship meetings

Career Improvement Courses

  • Proposal Writing for Scientists, 2008-01-08, Graduate School
  • Introduction to writing successful fellowship applications, Online/Self Study course,Graduate School

Workshops

Year 2 (Sep 2006 - Aug 2007)

Fellowship meetings

Communication skills

  • Presentation skills - building confidence (Science and Engineering), 2006-11-08, Graduate School
  • How to prepare an effective poster presentation, 2006-11-14 and 2006-12-06, Graduate School
  • Further presentation skills [GST2GP], 2006-01-26, Graduate School
  • Getting going on your thesis and getting your work published, 2007-02-15, Graduate School

Workshops

Year 1 (Sep 2005 - Aug 2006)

Fellowship meetings

Research skills

  • Planning research and time management, 2006-06-23, Graduate School
  • Introduction to quantitative research, 2006-05-15, Graduate School
  • Nature of the PhD and the Supervision Process, 2006-03-13, Graduate School

Courses

  • An introduction to Java programming, 2006-06-14 - 2006-09-10, Information Services
  • C-Programming, 2006-03-30 - 2006-04-04, Information Services

Workshops

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Ongoing activity
  • Improving Topology Prediction with further constraints. 2008/6 - 2008/10
  • Secondment at University of Florence. 2008/03 - 2008/05
  • Analysis of Supervised Machine learning algorithm for structure classification. 2008/01 - 2008/02
  • Prediction of structural descriptors and the results analysis. 2007/10
  • Started preparing the manuscript and calculation of sequence only descriptors for SSEs. 2007/09
  • Started the proposal for the work at Florence and needful bibliographic research. 2007/08
  • Attended EURO - XXII, continued analysis for only homologous proteins, regression at the protein level with 10x regression. 2007/07
  • Analysis of non-homologous protein datasets and preparation for EURO-XXII. 2007/06
  • Organising the code and analysis of the BLAST results 2007/05
  • Analysis of classification results and preparation for CBSB2007 workshop 2007/04
  • Structural Classification of proteins using SVM 2007/03
  • Classification of proteins based on geometric properties and comparison with SCOP classification 2007/02
  • Extension of protein profile - Inclusion of SSE type and Surface Accessibility 2007/02
  • Analysis of geometric arrangements of secondary structures in proteins 2007/01
  • Finding Descriptors for Protein Structure, 2006/11
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