User:PawelW

Talks

• Structure similarity consensus as a measure of quality in protein structure prediction
  2009-07-06, Bonn, EURO XXIII (20 min)
• GP-based design of energy functions for protein structure prediction
  2009-06-10, Florence, BIOPTRAIN workshop (45 min)
• GP-based design of energy functions for protein structure prediction
  2009-06-09, Nottingham, Research Away Day (60 min)
• Evolutionary design of the energy function for protein structure prediction
  2009-05-20, Trondheim, IEEE Congress on Evolutionary Computation (20 min)
• Evolving an energy function for protein structure prediction
  2008-11-21, Laboratory of Bioinformatics, Institute of Bioorganic Chemistry of the Polish Academy of Sciences, Poznań, Poland (45 min)
• Evolutionary design of the energy function for protein structure prediction
  2008-11-13, ASAP group seminar (40 min)
• Evolving energy function for the protein structure prediction
  2008-09-15, Rome, Mini EURO Conference on Computational Biology, Bioinformatics and Medicine (20 min)

Conferences

• EURO XIII, Bonn, Germany (2009-07-06 - 2009-07-08)
• CEC 2009, Trondheim, Norway (2009-05-18 - 2009-05-20)
• Mini EURO-CBBM Conference, Rome, Italy (2008-09-15 - 2008-09-17)

Publications

• P. Widera, J.M. Garibaldi, N. Krasnogor, Evolutionary design of the energy function for protein structure prediction, CEC 2009, submitted

Talks

• Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home
  2008-04-18, Computational Foundations of Nanoscience Journal Club (45 min)
• Metaheuristic for the protein structure comparison
  2007-10-19, ASAP group seminar (30 min)

Publications

• P. Widera, J.M. Garibaldi, N. Krasnogor, GP challange: evolving the energy function for protein structure prediction, GPEM, submitted

Talks

• Metaheuristic for the protein structure comparison
  2007-07-11, Prague, EURO XXII (20 min)
• The Framsticks system: versatile simulator of 3D agents and their evolution
  2006-12-15, Computational Foundations of Nanoscience Journal Club (40 min)
• The MAX-CMO problem and its representation
  2006-11-15, Nottingham, 5th East Midland Proteomics Workshop (20 min)
• Does representation matter?
  2006-11-01, ASAP group seminar (45 min)

Conferences

• EURO XXII, Prague, Czech Republic (2007-07-09 - 2007-07-11)
• EURO-CBBM Workshop, Prague, Czech Republic (2007-07-08)
• 5th East Midland Proteomics Workshop, Nottingham Trent University (2006-11-15)

Talks

• The MAX-CMO problem and its dual representation
  2006-07-03, Reykjavík, EURO XXI (25 min)

Conferences

• EURO XXI, Reykjavík, Iceland (2006-07-03 - 2006-07-05)
• Nottingham High Performance Computing Conference, University of Nottingham (2006-01-19)

Fellowship meetings

• BIOPTRAIN Workshop, Florence, Italy, (2009-06-10 - 2009-06-11)
• BIOPTRAIN Meeting, Innsbruck, Austria, (2009-01-12)

Communication skills

• Further Presentation Skills, Graduate School (2008-03-06)
• Presentation Skills - Building Confidence (Science and Engineering), Graduate School (2007-10-09)

Research skills

• Problem Exploration in Research, Graduate School (2007-11-09)

Fellowship meetings

• 2007‑01‑09, School of Computer Science

Communication skills

• Academic Writing Module - Research Writing (2006-10-10 - 2006-12-05)

Research skills

• Planning Research and Time Management, Graduate School (2006-12-12)
• Nature of the PhD and the Supervision Process, Graduate School (2006-11-27)

Courses

• Post-genomics and Bioinformatics, School of Biosciences (2007-02-12 - 2007-02-14)
• Computing and Molecular Biology, School of Biology (2006-11-21 - 2006-11-22)
• Protein Folding, School of Chemistry (2006-10-02 - 2006-11-07)

Fellowship meetings

• 2006‑07‑12, School of Computer Science
• 2006‑03‑02, School of Computer Science

Communication skills

• Academic Speaking Module - Discussion Skills (2006-02-14 - 2006-03-21)

Research skills

• Research Practice, School of Computer Science (2006-02-02 - 2006-05-31)

Courses

• Artificial Intelligence Methods (selected lectures), School of Computer Science (April 2006)

Training events

• New Research Staff Induction, University of Nottingham (2006‑04‑27)
• Activity Review Training, University of Nottingham (2006-03-24)

• ProCKSI consensus experiments
• research publication
• thesis writing

• GP design improvements
• energy function experiments
• decoys potential evaluation

• initial predictor pipeline
• literature review (protein folding potentials)
• results processing and behaviour analysis
• Max-CMO experiments run on cluster

• implementation of Tabu Search for Max-CMO
• Max-CMO problem analysis
• literature review (protein structure comparison/prediction)